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Table 3 Confusion matrix of S. peruvianum and S. corneliomulleri in the AFLP dataset

From: Reliable genomic strategies for species classification of plant genetic resources

  RF NB NJ
A priori classification S. per S. cor Other S. per S. cor Other S. per S. cor Other
S. peruvianum (n = 12) 0.92 0.08 0.00 0.00 0.00 1.00 0.75 0.25 0.00
S. corneliomulleri (n = 4) 1.00 0.00 0.00 0.00 0.25 0.75 0.50 0.50 0.00
  1-NN 3-NN
A priori classification S. per S. cor Other S. per S. cor Other
S. peruvianum (n = 12) 0.75 0.25 0.00 1.00 0.00 0.00
S. corneliomulleri (n = 4) 0.75 0.25 0.00 0.25 0.67 0.25
  1. Confusion matrix of the AFLP tomato dataset, showing fractionally how often S. peruvianum and S. corneliomulleri are classified as themselves, as each other, and as other species by Random Forest (RF), Naive Bayes (NB), Neighbour-Joining (NJ), 1-Nearest Neighbour (1-NN), and 3-Nearest Neighbours (3-NN)
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BMC Bioinformatics

ISSN: 1471-2105

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