Volume 9 Supplement 7

UT-ORNL-KBRIN Bioinformatics Summit 2008

Meeting abstracts

Edited by Eric C Rouchka and Julia Krushkal

UT-ORNL-KBRIN Bioinformatics Summit 2008. Go to conference site.

Cadiz, KY, USA28-30 March 2008

Concatenated PDF 9S7

Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008

Authors: Eric C Rouchka, Julia Krushkal and Daniel Goldowitz

Citation: BMC Bioinformatics 2008 9(Suppl 7):I1

Content type: Meeting report

Published on: 8 July 2008
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Using a literature-based NMF model for discovering gene functional relationships

Authors: Elina Tjioe, Michael Berry, Ramin Homayouni and Kevin Heinrich

Citation: BMC Bioinformatics 2008 9(Suppl 7):P1

Content type: Poster presentation

Published on: 8 July 2008
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Candidate genes within known QTL of type 1 diabetes from mouse models

Authors: Weikuan Gu, Ivan Gerling, Yan Jiao, Peng Gao and Qing Xiong

Citation: BMC Bioinformatics 2008 9(Suppl 7):P2

Content type: Poster presentation

Published on: 8 July 2008
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MedSurv: a software application for creating, conducting and managing medical surveys and questionnaires

Authors: Zachary S Ware, Lisbeth A Selby and Jerzy W Jaromczyk

Citation: BMC Bioinformatics 2008 9(Suppl 7):P3

Content type: Poster presentation

Published on: 8 July 2008
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Genomic analysis of gene regulation complexity

Authors: Brandon Barker and Jim Lund

Citation: BMC Bioinformatics 2008 9(Suppl 7):P4

Content type: Poster presentation

Published on: 8 July 2008
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Scientific Laboratory Information Management System: Tissue Bank

Authors: Chanchai McDonald, Anand Kulkarni and Teeradache Viangteeravat

Citation: BMC Bioinformatics 2008 9(Suppl 7):P5

Content type: Poster presentation

Published on: 8 July 2008
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Bioinformatics analysis of immune response to group A streptococcal sepsis integrating quantitative trait loci mapping with genome-wide expression studies

Authors: Nourtan Abdeltawab, Rita Kansal, Sarah Rowe, Lidia Gardner, Charity Brannen, Mohammed Nooh, Santhosh Mukundan, Hossam Abdelsamed, Ramy Attia, William Taylor, Lu Lu, Robert Williams and Malak Kotb

Citation: BMC Bioinformatics 2008 9(Suppl 7):P6

Content type: Poster presentation

Published on: 8 July 2008
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Global profile of genes regulated by securin

Authors: Sham S Kakar, Siva K Panguluri and Sabine J Waigel

Citation: BMC Bioinformatics 2008 9(Suppl 7):P7

Content type: Poster presentation

Published on: 8 July 2008
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Buffered codons in human transcriptional units

Authors: Rami Mahdi and Eric C Rouchka

Citation: BMC Bioinformatics 2008 9(Suppl 7):P8

Content type: Poster presentation

Published on: 8 July 2008
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Haplotypes of the imprinted insulin gene are associated with size for gestational age and umbilical cord IGF-II levels

Authors: Ronald Adkins, Julia Krushkal, Chad Klauser, Everett Magann, Grant Somes, John Fain and John Morrison

Citation: BMC Bioinformatics 2008 9(Suppl 7):P9

Content type: Poster presentation

Published on: 8 July 2008
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QTL mapping arthritis traits in CXB mice

Authors: Dana Marshall, Jeremy Peirce, Fang Zhou, Lu Lu, Rob Williams, Ken Manly and John Stuart

Citation: BMC Bioinformatics 2008 9(Suppl 7):P10

Content type: Poster presentation

Published on: 8 July 2008
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Evaluation of pooled allelotyping versus individual genotyping for genome-wide association analysis of complex disease

Authors: Siddharth Pratap, Scott M Williams and Shawn E Levy

Citation: BMC Bioinformatics 2008 9(Suppl 7):P11

Content type: Poster presentation

Published on: 8 July 2008
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A permutation-based method to identify loss-of-heterozygosity using paired genotype microarray data

Authors: Stan Pounds, Cheng Cheng, Wenjian Yang, Arzu Onar, Christine Hartford, Susana Raimondi and Mary Relling

Citation: BMC Bioinformatics 2008 9(Suppl 7):P12

Content type: Poster presentation

Published on: 8 July 2008
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Random number generation for DNA-based security circuitry

Authors: Christy M Bogard, Eric C Rouchka and Benjamin Arazi

Citation: BMC Bioinformatics 2008 9(Suppl 7):P13

Content type: Poster presentation

Published on: 8 July 2008
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Model of visual attention for video sequences

Authors: Mariofanna Milanova

Citation: BMC Bioinformatics 2008 9(Suppl 7):P14

Content type: Poster presentation

Published on: 8 July 2008
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Microarray analysis of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Authors: Julie B Schuck, Michael E Smith, Xiaohong Li and Nigel GF Cooper

Citation: BMC Bioinformatics 2008 9(Suppl 7):P15

Content type: Poster presentation

Published on: 8 July 2008
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Analysis of the transcriptome of CD4 T-Lymphocytes from young Non-Obese Diabetic (NOD) mice suggests a key role for cytokines and apoptosis

Authors: Dorothy N Kakoola, Nataliya I Lenchik, Anita Curcio-Brint and Ivan C Gerling

Citation: BMC Bioinformatics 2008 9(Suppl 7):P16

Content type: Poster presentation

Published on: 8 July 2008
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Identifying regulatory elements and gene boundaries with comparative genomic sequence analysis

Authors: Jim Lund

Citation: BMC Bioinformatics 2008 9(Suppl 7):P17

Content type: Poster presentation

Published on: 8 July 2008
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Gene classification for microarray data with multiple time measurements

Authors: Jonathan Quiton, Claire Rinehart, Joseph Chavarria-Smith and Nancy Rice

Citation: BMC Bioinformatics 2008 9(Suppl 7):P18

Content type: Poster presentation

Published on: 8 July 2008
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Robust detection method for differential expression studies

Authors: Shesh N Rai and Stanley Pounds

Citation: BMC Bioinformatics 2008 9(Suppl 7):P19

Content type: Poster presentation

Published on: 8 July 2008
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i-SEGOPubmed: a web interface for semantic enabled browsing of PubMed using Gene Ontology

Authors: Mohammed Yeasin, Bhanu C Vanteru, Jahangheer S Shaik and Faruk Ahmed

Citation: BMC Bioinformatics 2008 9(Suppl 7):P20

Content type: Poster presentation

Published on: 8 July 2008
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Proteome discovery pipeline for mass spectrometry-based proteomics

Authors: Erik Gough, Cheolhwan Oh, Jing He, Catherine P Riley, Charles R Buck and Xiang Zhang

Citation: BMC Bioinformatics 2008 9(Suppl 7):P21

Content type: Poster presentation

Published on: 8 July 2008
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A computational and analysis tool for proteomics research

Authors: Xinnan Niu, K Jill McAfee, Dexter T Duncan, Michael Assink and Andrew J Link

Citation: BMC Bioinformatics 2008 9(Suppl 7):P22

Content type: Poster presentation

Published on: 8 July 2008
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Modeling mis-folded lysozyme aggregates

Authors: Pongsathorn Chotikasemsri and Claire Rinehart

Citation: BMC Bioinformatics 2008 9(Suppl 7):P23

Content type: Poster presentation

Published on: 8 July 2008
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De novo identification of in vivo binding sites from ChIP-chip data

Authors: Victor Jin, Alina Rabinovich, Henny O'Geen, Sushma Iyengar and Peggy Farnham

Citation: BMC Bioinformatics 2008 9(Suppl 7):P24

Content type: Poster presentation

Published on: 8 July 2008
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Techniques for the analysis of trichome Pelagonium xhortorum expressed sequence tags

Authors: Joseph Morris, Eric Rouchka and David Schultz

Citation: BMC Bioinformatics 2008 9(Suppl 7):P25

Content type: Poster presentation

Published on: 8 July 2008
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UT-ORNL-KBRIN Bioinformatics Summit 2008

Meeting abstracts

Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008

Using a literature-based NMF model for discovering gene functional relationships

Candidate genes within known QTL of type 1 diabetes from mouse models

MedSurv: a software application for creating, conducting and managing medical surveys and questionnaires

Genomic analysis of gene regulation complexity

Scientific Laboratory Information Management System: Tissue Bank

Bioinformatics analysis of immune response to group A streptococcal sepsis integrating quantitative trait loci mapping with genome-wide expression studies

Global profile of genes regulated by securin

Buffered codons in human transcriptional units

Haplotypes of the imprinted insulin gene are associated with size for gestational age and umbilical cord IGF-II levels

QTL mapping arthritis traits in CXB mice

Evaluation of pooled allelotyping versus individual genotyping for genome-wide association analysis of complex disease

A permutation-based method to identify loss-of-heterozygosity using paired genotype microarray data

Random number generation for DNA-based security circuitry

Model of visual attention for video sequences

Microarray analysis of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Analysis of the transcriptome of CD4 T-Lymphocytes from young Non-Obese Diabetic (NOD) mice suggests a key role for cytokines and apoptosis

Identifying regulatory elements and gene boundaries with comparative genomic sequence analysis

Gene classification for microarray data with multiple time measurements

Robust detection method for differential expression studies

i-SEGOPubmed: a web interface for semantic enabled browsing of PubMed using Gene Ontology

Proteome discovery pipeline for mass spectrometry-based proteomics

A computational and analysis tool for proteomics research

Modeling mis-folded lysozyme aggregates

De novo identification of in vivo binding sites from ChIP-chip data

Techniques for the analysis of trichome Pelagonium xhortorum expressed sequence tags

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